Uses of Class org.snpeff.genBank.Feature (SnpEff 5.4 API)

Packages that use Feature

Package

Description

org.snpeff.genBank

org.snpeff.snpEffect.factory

Uses of Feature in org.snpeff.genBank

Classes in org.snpeff.genBank that implement interfaces with type arguments of type Feature

Modifier and Type

Class

Description

class

Features

A class representing a set of features References: http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html

Methods in org.snpeff.genBank that return types with arguments of type Feature

Modifier and Type

Method

Description

ArrayList<Feature>

Features.getFeatures()

Iterator<Feature>

Features.iterator()
Uses of Feature in org.snpeff.snpEffect.factory

Methods in org.snpeff.snpEffect.factory with parameters of type Feature

Modifier and Type

Method

Description

protected String

SnpEffPredictorFactoryFeatures.geneId(Feature f, int start, int end)

Try to get geneIDs

protected String

SnpEffPredictorFactoryFeatures.geneName(Feature f, int start, int end)

Get gene name from feature