---
name: fasta3
version: 36.3.2
origin: biology/fasta3
comment: A collection of programs for searching DNA and protein databases
arch: freebsd:9:x86:64
www: http://fasta.bioch.virginia.edu/
maintainer: wen@FreeBSD.org
prefix: /usr/local
licenselogic: single
flatsize: 7589392
desc: |
  Version 3 of the FASTA packages contains many programs for searching DNA and
  protein databases and one program (prss3) for evaluating statistical
  significance from randomly shuffled sequences.  Several additional analysis
  programs, including programs that produce local alignments, are available as
  part of version 2 of the FASTA package, which is available as the port
  biology/fasta.

  FASTA is described in:  W. R. Pearson and D. J. Lipman (1988), "Improved
  Tools for Biological Sequence Analysis", PNAS 85:2444-2448; W. R.  Pearson
  (1996) "Effective protein sequence comparison" Meth. Enzymol.  266:227-258;
  Pearson et. al.  (1997) Genomics 46:24-36;  Pearson, (1999) Meth. in
  Molecular Biology 132:185-219.

  The FASTA3 suite is distributed freely subject to the condition that it may
  not be sold or incorporated into a commercial product.

  Author: William R Pearson <wrp@virginia.edu>
  WWW:    http://fasta.bioch.virginia.edu/
categories: [biology]
files:
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  /usr/local/share/fasta3/dna.mat: 51d23de1e89ea69ad28fd039e2c4496bbe1a478f8e3b62a14d77133dc80aea57
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  /usr/local/share/fasta3/md_40.mat: 0f23c5d8b4f657e0b0cf9f7d92aa7986bdc8bf39c569c1dfc986979580e19654
  /usr/local/share/fasta3/pam120.mat: d5c988d56905ecdbaa4b42bf91c3336dca53f73c1ca5ef30e57a87e4c6bb3e04
  /usr/local/share/fasta3/pam250.mat: a543b0bd0a417a5626e15079c090498049f814c5ddf3acce12c100b324f1bf78
  /usr/local/share/fasta3/rna.mat: e308296d804f9d1279183d2c0aaf864a86aa00ad25e7293e2354414ba9a75882
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directories:
  /usr/local/share/fasta3/: n
  /usr/local/share/examples/fasta3/: n
  /usr/local/share/doc/fasta3/: n
scripts: {}
message: "=============================================================================\n\n
  The FASTA3 package has been successfully installed.\n\n A sample configuration file
  has been installed to \n /usr/local/etc \n as \"fastlibs.sample\". This may be renamed
  to \"fastlibs\" and edited\n to suit the requirements of a particular site.\n\n
  In order to use the FASTA3 programs, a user must set the environment\n variable
  FASTLIBS to contain the full path of the FASTA3 configuration\n file, e.g.:\n\n
  set FASTLIBS to: \"/usr/local/etc/fastlibs\"\n\n==============================================================================\n"
