---
name: blat
version: 34
origin: biology/blat
comment: Fast tool for local sequence similarity searches
arch: freebsd:9:x86:64
www: http://www.genomeblat.com
maintainer: ports@FreeBSD.org
prefix: /usr/local
licenselogic: single
flatsize: 2124134
desc: |
  BLAT is a bioinformatics software tool which performs rapid mRNA/DNA
  and cross-species protein alignments. BLAT is more accurate and 500
  times faster than popular existing tools for mRNA/DNA alignments and 50
  times faster for protein alignments at sensitivity settings typically
  used when comparing vertebrate sequences. (Source: Kent, W.J. 2002. BLAT
  -- The BLAST-Like Alignment Tool. Genome Research 4: 656-664.
  http://dx.doi.org/10.1101/gr.229202)

  BLAT is not BLAST. DNA BLAT works by keeping an index of the entire
  genome (but not the genome itself) in memory. Since the index takes up a
  bit less than a gigabyte of RAM, BLAT can deliver high performance on a
  reasonably priced Linux box.

  WWW: http://www.genomeblat.com
categories:
- biology
options: {DOCS: on}
files:
  /usr/local/bin/blat: 351f174663592aac90adb5e71488a053a5f569d253d931a71b80e7afb059cb02
  /usr/local/bin/faToNib: 3b19058233a726c7b22581ded772784fb7d524036dacb976eb123ed4118366b3
  /usr/local/bin/faToTwoBit: bf0f36953285d2b46d34922926f60015e53de89e3a8357a99de763195f4bcb83
  /usr/local/bin/gfClient: ccdbcab8e085dfa8f0fc189df309ed7483ea84aa884af6d4521802daa0a035e4
  /usr/local/bin/gfServer: e66ab50a788df812ff5a4673ac6b1f0326c08b3625c90a0b70d1fad5d91fd33e
  /usr/local/bin/nibFrag: 664ca5e7744aaf722a92e0c4942618b025b9ae23da976a6106ac98d1c5dbd512
  /usr/local/bin/pslPretty: 14d3e1e2b9301309afe2cf58aea4b2e0815d9f09181362c88fd87038e845896a
  /usr/local/bin/pslReps: bdae6ea15dfd70604f5f27d6b78a1e218926661f103ef03ffc227935a997e3f8
  /usr/local/bin/pslSort: efba2f15cd64acad9b815128cce16347a04d74372a4b4551a31256079255430a
  /usr/local/bin/twoBitInfo: d0d3a5d37c35c0391369d33fcc9ed9a5c57666ca3fdac970d5142b64fdf03994
  /usr/local/bin/twoBitToFa: 1ce346c9344ce6f7dedb17ad6ad318cee383265ef13d321993489cb668a65658
  /usr/local/share/blat/webBlat/install.txt: 4f74e2e7df0c51d277677c4f64f94a7133deb57c632584b085daad1e415ad8ce
  /usr/local/share/blat/webBlat/webBlat: cda4ca98f50d96e491be3162ac8d3f720f539a71c63a6ca2ba8bb26702ea10f4
  /usr/local/share/doc/blat/README: e9270f4283f284533ddcaee124a3873cf83c2b7a193b7ec08d24b0d4b6d8be88
directories:
  /usr/local/share/doc/blat/: n
  /usr/local/share/blat/webBlat/: n
  /usr/local/share/blat/: n
scripts: {}
message: "===============================================================================\n\n
  A CGI script (webBlat) and instructions on how to set up a BLAT web server\n have
  been installed in \n \n /usr/local/share/blat\n\n===============================================================================\n"
