VTK  9.1.0
vtkNewickTreeReader.h
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1 /*=========================================================================
2 
3  Program: Visualization Toolkit
4  Module: vtkNewickTreeReader.h
5 
6  Copyright (c) Ken Martin, Will Schroeder, Bill Lorensen
7  All rights reserved.
8  See Copyright.txt or http://www.kitware.com/Copyright.htm for details.
9 
10  This software is distributed WITHOUT ANY WARRANTY; without even
11  the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR
12  PURPOSE. See the above copyright notice for more information.
13 
14 =========================================================================*/
31 #ifndef vtkNewickTreeReader_h
32 #define vtkNewickTreeReader_h
33 
34 #include "vtkDataReader.h"
35 #include "vtkIOInfovisModule.h" // For export macro
36 
37 class vtkDoubleArray;
39 class vtkStringArray;
40 class vtkTree;
41 
42 class VTKIOINFOVIS_EXPORT vtkNewickTreeReader : public vtkDataReader
43 {
44 public:
47  void PrintSelf(ostream& os, vtkIndent indent) override;
48 
50 
54  vtkTree* GetOutput(int idx);
55  void SetOutput(vtkTree* output);
56  int ReadNewickTree(const char* buffer, vtkTree& tree);
58 
62  int ReadMeshSimple(VTK_FILEPATH const std::string& fname, vtkDataObject* output) override;
63 
64 protected:
67 
69  void CountNodes(const char* buffer, vtkIdType* numNodes);
71  vtkStringArray* names, vtkIdType parent);
72 
73 private:
75  void operator=(const vtkNewickTreeReader&) = delete;
76 };
77 
78 #endif
general representation of visualization data
Definition: vtkDataObject.h:60
helper superclass for objects that read vtk data files
Definition: vtkDataReader.h:55
dynamic, self-adjusting array of double
a simple class to control print indentation
Definition: vtkIndent.h:34
Store vtkAlgorithm input/output information.
An editable directed graph.
read vtkTree from Newick formatted file
void SetOutput(vtkTree *output)
Get the output of this reader.
int ReadNewickTree(const char *buffer, vtkTree &tree)
Get the output of this reader.
int FillOutputPortInformation(int, vtkInformation *) override
Fill the output port information objects for this algorithm.
vtkIdType BuildTree(char *buffer, vtkMutableDirectedGraph *g, vtkDoubleArray *weights, vtkStringArray *names, vtkIdType parent)
void PrintSelf(ostream &os, vtkIndent indent) override
Methods invoked by print to print information about the object including superclasses.
~vtkNewickTreeReader() override
void CountNodes(const char *buffer, vtkIdType *numNodes)
vtkTree * GetOutput()
Get the output of this reader.
vtkTree * GetOutput(int idx)
Get the output of this reader.
int ReadMeshSimple(VTK_FILEPATH const std::string &fname, vtkDataObject *output) override
Actual reading happens here.
static vtkNewickTreeReader * New()
a vtkAbstractArray subclass for strings
A rooted tree data structure.
Definition: vtkTree.h:55
@ string
Definition: vtkX3D.h:496
int vtkIdType
Definition: vtkType.h:332
#define VTK_FILEPATH